Bioconductor Backwards compatibility

Showing : backwards compatibility • reset

2

votes

2

replies

1.3k

views

summarizedexperiment backwards compatibility

updated 8.5 years ago by Hervé Pagès 16k • written 8.5 years ago by Ryan C. Thompson ★ 7.9k

0

votes

1

reply

1.2k

views

upgrade new version backwards compatibility

updated 9.8 years ago by Steve Lianoglou ★ 13k • written 9.8 years ago by jrdemasi • 0

2 results • Page 1 of 1

Recent ...

Replies

Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac ( by James W. MacDonald 67k

You will probably have to ask the Signac people. I don't know exactly what is going on under the hood for `AddMotif`, but the `EnsDb` seems…

Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac ( by Paul • 0

Unfortunately I've updated my code with the newest GRCm39 genome, and yet I am still getting the same error.... Is there anything else I ca…

Comment: WGCNA with TPM tables by ATpoint ★ 4.5k

WGCNA is not a Bioconductor package, but generally: If you want to do serious analysis then find the raw data. There is no guarantee what …

Answer: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac ( by James W. MacDonald 67k

The `EnsDb.Mmusculus.v79` package is mm38, not mm39. If you want a current `EnsDb`, use `AnnotationHub` ``` > library(AnnotationHub) >…

Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

I'm adding my comment to the threaded section ... I don't have any suggestions here but whatever method you're using is not appropriate up…

Votes

Answer: ANOVA like approach of edgeR

A: ANOVA-like test with edgeR

Awards • All